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- Novel Comparative Study for the Detection of COVID-19 Using CT Scan and Chest X-ray ImagesPublication . Hayat, Ahatsham; Baglat, Preety; Mendonça, Fábio; Mostafa, Sheikh Shanawaz; Dias, Fernando MorgadoThe number of coronavirus disease (COVID-19) cases is constantly rising as the pandemic continues, with new variants constantly emerging. Therefore, to prevent the virus from spreading, coronavirus cases must be diagnosed as soon as possible. The COVID-19 pandemic has had a devastating impact on people’s health and the economy worldwide. For COVID-19 detection, reverse transcription-polymerase chain reaction testing is the benchmark. However, this test takes a long time and necessitates a lot of laboratory resources. A new trend is emerging to address these limitations regarding the use of machine learning and deep learning techniques for automatic analysis, as these can attain high diagnosis results, especially by using medical imaging techniques. However, a key question arises whether a chest computed tomography scan or chest X-ray can be used for COVID-19 detection. A total of 17,599 images were examined in this work to develop the models used to classify the occurrence of COVID-19 infection, while four different classifiers were studied. These are the convolutional neural network (proposed architecture (named, SCovNet) and Resnet18), support vector machine, and logistic regression. Out of all four models, the proposed SCoVNet architecture reached the best performance with an accuracy of almost 99% and 98% on chest computed tomography scan images and chest X-ray images, respectively.
- Noncontact Automatic Water-Level Assessment and Prediction in an Urban Water Stream Channel of a Volcanic Island Using Deep LearningPublication . Mendonça, Fabio; Mostafa, Sheikh Shanawaz; Dias, Fernando Morgado; Azevedo, Joaquim Amândio; Ravelo-García, Antonio G.; Navarro-Mesa, Juan L.Traditional methods for water-level measurement usually employ permanent structures, such as a scale built into the water system, which is costly and laborious and can wash away with water. This research proposes a low-cost, automatic water-level estimator that can appraise the level without disturbing water flow or affecting the environment. The estimator was developed for urban areas of a volcanic island water channel, using machine learning to evaluate images captured by a low-cost remote monitoring system. For this purpose, images from over one year were collected. For better performance, captured images were processed by converting them to a proposed color space, named HLE, composed of hue, lightness, and edge. Multiple residual neural network architectures were examined. The best-performing model was ResNeXt, which achieved a mean absolute error of 1.14 cm using squeeze and excitation and data augmentation. An explainability analysis was carried out for transparency and a visual explanation. In addition, models were developed to predict water levels. Three models successfully forecasted the subsequent water levels for 10, 60, and 120 min, with mean absolute errors of 1.76 cm, 2.09 cm, and 2.34 cm, respectively. The models could follow slow and fast transitions, leading to a potential flooding risk-assessment mechanism.
- Visual Explanations of Deep Learning Architectures in Predicting Cyclic Alternating Patterns Using Wavelet TransformsPublication . Gupta, Ankit; Mendonça, Fabio; Mostafa, Sheikh Shanawaz; Ravelo-García, Antonio G.; Dias, Fernando Morgado: Cyclic Alternating Pattern (CAP) is a sleep instability marker defined based on the ampli tude and frequency of the electroencephalogram signal. Because of the time and intensive process of labeling the data, different machine learning and automatic approaches are proposed. However, due to the low accuracy of the traditional approach and the black box approach of the machine learning approach, the proposed systems remain untrusted by the physician. This study contributes to accurately estimating CAP in a Frequency-Time domain by A-phase and its subtypes prediction by transforming the monopolar deviated electroencephalogram signals into corresponding scalograms. Subsequently, various computer vision classifiers were tested for the A-phase using scalogram images. It was found that MobileNetV2 outperformed all other tested classifiers by achieving the average accuracy, sensitivity, and specificity values of 0.80, 0.75, and 0.81, respectively. The MobileNetV2 trained model was further fine-tuned for A-phase subtypes prediction. To further verify the visual ability of the trained models, Gradcam++ was employed to identify the targeted regions by the trained network. It was verified that the areas identified by the model match the regions focused on by the sleep experts for A-phase predictions, thereby proving its clinical viability and robustness. This motivates the development of novel deep learning based methods for CAP patterns predictions.
- The Potential of Machine Learning for Wind Speed and Direction Short-Term Forecasting: A Systematic ReviewPublication . Alves, Décio; Mendonça, Fábio; Mostafa, Sheikh Shanawaz; Dias, Fernando MorgadoWind forecasting, which is essential for numerous services and safety, has significantly improved in accuracy due to machine learning advancements. This study reviews 23 articles from 1983 to 2023 on machine learning for wind speed and direction nowcasting. The wind prediction ranged from 1 min to 1 week, with more articles at lower temporal resolutions. Most works employed neural networks, focusing recently on deep learning models. Among the reported performance metrics, the most prevalent were mean absolute error, mean squared error, and mean absolute percentage error. Considering these metrics, the mean performance of the examined works was 0.56 m/s, 1.10 m/s, and 6.72%, respectively. The results underscore the novel effectiveness of machine learning in predicting wind conditions using high-resolution time data and demonstrated that deep learning models surpassed traditional methods, improving the accuracy of wind speed and direction forecasts. Moreover, it was found that the inclusion of non-wind weather variables does not benefit the model’s overall performance. Further studies are recommended to predict both wind speed and direction using diverse spatial data points, and high-resolution data are recommended along with the usage of deep learning models.
- A Systematic Review of Detecting Sleep Apnea Using Deep LearningPublication . Mostafa, Sheikh Shanawaz; Mendonça, Fábio; Ravelo-García, Antonio G.; Dias, Fernando MorgadoSleep apnea is a sleep related disorder that significantly affects the population. Polysomnography, the gold standard, is expensive, inaccessible, uncomfortable and an expert technician is needed to score. Numerous researchers have proposed and implemented automatic scoring processes to address these issues, based on fewer sensors and automatic classification algorithms. Deep learning is gaining higher interest due to database availability, newly developed techniques, the possibility of producing machine created features and higher computing power that allows the algorithms to achieve better performance than the shallow classifiers. Therefore, the sleep apnea research has currently gained significant interest in deep learning. The goal of this work is to analyze the published research in the last decade, providing an answer to the research questions such as how to implement the different deep networks, what kind of pre-processing or feature extraction is needed, and the advantages and disadvantages of different kinds of networks. The employed signals, sensors, databases and implementation challenges were also considered. A systematic search was conducted on five indexing services from 2008–2018. A total of 255 papers were found and 21 were selected by considering the inclusion and exclusion criteria, using the preferred reporting items for systematic reviews and meta-analyses (PRISMA) approach.
- Non-Destructive Banana Ripeness Detection Using Shallow and Deep Learning: A Systematic ReviewPublication . Baglat, Preety; Hayat, Ahatsham; Mendonça, Fábio; Gupta, Ankit; Mostafa, Sheikh Shanawaz; Dias, Fernando MorgadoThe ripeness of bananas is the most significant factor affecting nutrient composition and demand. Conventionally, cutting and ripeness analysis requires expert knowledge and substantial human intervention, and different studies have been conducted to automate and substantially reduce human effort. Using the Preferred Reporting Items for the Systematic Reviews approach, 1548 studies were extracted from journals and conferences, using different research databases, and 35 were included in the final review for key parameters. These studies suggest the dominance of banana fingers as input data, a sensor camera as the preferred capturing device, and appropriate features, such as color, that can provide better detection. Among six stages of ripeness, the studies employing the four mentioned stages performed better in terms of accuracy and coefficient of determination value. Among all the works for detecting ripeness stages prediction, convolutional neural networks were found to perform sufficiently well with large datasets, whereas conventional artificial neural networks and support vector machines attained better performance for sensor-related data. However, insufficient information on the dataset and capturing device, limited data availability, and exploitation of data augmentation techniques are limitations in existing studies. Thus, effectively addressing these shortcomings and close collaboration with experts to predict the ripeness stages should be pursued.
- Machine learning system for commercial banana harvestingPublication . Hayat, Ahatsham; Baglat, Preety; Mendonça, Fábio; Mostafa, Sheikh Shanawaz; Dias, Fernando Morgado; Baglat, Preety; Silva Mendonça, Fábio Rúben; Morgado-Dias, FernandoAbstract The conventional process of visual detection and manual harvesting of the banana bunch has been a known problem faced by the agricultural industry. It is a laborious activity associated with inconsistency in the inspection and grading process, leading to post-harvest losses. Automated fruit harvesting using computer vision empowered by deep learning could significantly impact the visual inspection process domains, allowing consistent harvesting and grading. To achieve the goal of the industry-level harvesting process, this work collects data from professional harvesters from the industry. It investigates six state-of-the-art architectures to find the best solution. 2,685 samples were collected from four different sites with expert opinions from industry harvesters to cut (or harvest) and keep (or not harvest) the banana brunch. Comparative results showed that the DenseNet121 architecture outperformed the other examined architectures, reaching a precision, recall, F1 score, accuracy, and specificity of 85%, 82%, 82%, 83%, and 83%, respectively. In addition, an understanding of the underlying black box nature of the solution was visualized and found adequate. This visual interpretation of the model supports human expert’s criteria for harvesting. This system can assist or replace human experts in the field.